proteomics 20100914


Proteomics: A discovery strategy for novel cancer biomarkers.
Swami M.
Nat Rev Cancer. 2010 Sep;10(9):597. No abstract available. PMID: 20803807

Clinical microfluidics for neutrophil genomics and proteomics.
Kotz KT, Xiao W, Miller-Graziano C, Qian WJ, Russom A, Warner EA, Moldawer LL, De A, Bankey PE, Petritis BO, Camp DG 2nd, Rosenbach AE, Goverman J, Fagan SP, Brownstein BH, Irimia D, Xu W, Wilhelmy J, Mindrinos MN, Smith RD, Davis RW, Tompkins RG, Toner M; the Inflammation and the Host Response to Injury Collaborative Research Program, Baker HV, Balis UG, Billiar TR, Calvano SE, Cobb JP, Cuschieri J, Finnerty CC, Gamelli RL, Gibran NS, Harbrecht BG, Hayden DL, Hennessy L, Herndon DN, Jeschke MG, Johnson JL, Klein MB, Lowry SF, Maier RV, Mason PH, McDonald-Smith GP, Minei JP, Moore EE, Nathens AB, O Keefe GE, Rahme LG, Remick DG, Schoenfeld DA, Shapiro MB, Sperry J, Storey JD, Tibshirani R, Warren HS, West MA, Wispelwey B, Wong WH.
Nat Med. 2010 Aug 29. [Epub ahead of print]PMID: 20802500

Molecular diagnostics in transplantation.
Naesens M, Sarwal MM.
Nat Rev Nephrol. 2010 Aug 24. [Epub ahead of print]PMID: 20736923

The grand challenge to decipher the cancer proteome.
Hanash S, Taguchi A.
Nat Rev Cancer. 2010 Sep;10(9):652-60.PMID: 20733593

SMN deficiency disrupts brain development in a mouse model of severe spinal muscular atrophy.
Wishart TM, Huang JP, Murray LM, Lamont DJ, Mutsaers CA, Ross J, Geldsetzer P, Ansorge O, Talbot K, Parson SH, Gillingwater TH.
Hum Mol Genet. 2010 Aug 12. [Epub ahead of print]PMID: 20705736

Recent patent applications in proteomics.
[No authors listed]
Nat Biotechnol. 2010 Aug;28(8):806. No abstract available. PMID: 20697403

Genome-wide association study identifies 1p36.22 as a new susceptibility locus for hepatocellular carcinoma in chronic hepatitis B virus carriers.
Zhang H, Zhai Y, Hu Z, Wu C, Qian J, Jia W, Ma F, Huang W, Yu L, Yue W, Wang Z, Li P, Zhang Y, Liang R, Wei Z, Cui Y, Xie W, Cai M, Yu X, Yuan Y, Xia X, Zhang X, Yang H, Qiu W, Yang J, Gong F, Chen M, Shen H, Lin D, Zeng YX, He F, Zhou G.
Nat Genet. 2010 Aug 1. [Epub ahead of print]PMID: 20676096

Nucleolar proteomics and viral infection.
Hiscox JA, Whitehouse A, Matthews DA.
Proteomics. 2010 Jul 19. [Epub ahead of print]PMID: 20661956

Differentiation among various kinds of cheese by identification of casein using HPLC-chip/MS/MS.
Franc M, K?i?ek T, Coufal P, Stulik K.
J Sep Sci. 2010 Jul 19. [Epub ahead of print]PMID: 20645391

Identification of optimal drug combinations targeting cellular networks: integrating phospho-proteomics and computational network analysis.
Iadevaia S, Lu Y, Morales FC, Mills GB, Ram PT.
Cancer Res. 2010 Jul 19. [Epub ahead of print]PMID: 20643779

Proteomics: a pragmatic perspective.
Mallick P, Kuster B.
Nat Biotechnol. 2010 Jul;28(7):695-709. Epub 2010 Jul 9.PMID: 20622844

The Rate of Cell Differentiation Controls the Arabidopsis Root Meristem Growth Phase.
Moubayidin L, Perilli S, Dello Ioio R, Di Mambro R, Costantino P, Sabatini S.
Curr Biol. 2010 Jun 2. [Epub ahead of print]PMID: 20605455

When peptides fly: Advances in Drosophila proteomics.
Veraksa A.
J Proteomics. 2010 May 22. [Epub ahead of print]PMID: 20580952

Human POGZ modulates dissociation of HP1alpha from mitotic chromosome arms through Aurora B activation.
Nozawa RS, Nagao K, Masuda HT, Iwasaki O, Hirota T, Nozaki N, Kimura H, Obuse C.
Nat Cell Biol. 2010 Jun 20. [Epub ahead of print]PMID: 20562864

Ecological Adaptation of Diverse Honey Bee (Apis mellifera) Populations.
Parker R, Melathopoulos AP, White R, Pernal SF, Guarna MM, Foster LJ.
PLoS One. 2010 Jun 15;5(6):e11096.PMID: 20559562

Proteomic identification of phosphatidylinositol (3,4,5) triphosphate-binding proteins in Dictyostelium discoideum.
Zhang P, Wang Y, Sesaki H, Iijima M.
Proc Natl Acad Sci U S A. 2010 Jun 14. [Epub ahead of print]PMID: 20547830

Next-generation genomics: an integrative approach.
Hawkins RD, Hon GC, Ren B.
Nat Rev Genet. 2010 Jun 8. [Epub ahead of print]PMID: 20531367

Complementary positional proteomics for screening substrates of endo- and exoproteases.
Van Damme P, Staes A, Bronsoms S, Helsens K, Colaert N, Timmerman E, Aviles FX, Vandekerckhove J, Gevaert K.
Nat Methods. 2010 Jun 6. [Epub ahead of print]PMID: 20526345

Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints.
Zielinska DF, Gnad F, Wi?niewski JR, Mann M.
Cell. 2010 May 28;141(5):897-907.PMID: 20510933

PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences.
Murakami Y, Spriggs RV, Nakamura H, Jones S.
Nucleic Acids Res. 2010 May 27. [Epub ahead of print]PMID: 20507911

Quantifying cross-tissue diversity in proteasome complexes by mass spectrometry.
Pelletier S, Schuurman KG, Berkers CR, Ovaa H, Heck AJ, Raijmakers R.
Mol Biosyst. 2010 May 24. [Epub ahead of print]PMID: 20498902

abelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.
Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tarraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, Garcia F, Marba M, Montaner D, Dopazo J.
Nucleic Acids Res. 2010 May 16. [Epub ahead of print]PMID: 20478823

Mass spectrometry and the evolution of proteomics.
Burlingame AL, Stults JT.
Mol Cell Proteomics. 2010 May;9(5):753. No abstract available. PMID: 20439911

Native GABA(B) receptors are heteromultimers with a family of auxiliary subunits.
Schwenk J, Metz M, Zolles G, Turecek R, Fritzius T, Bildl W, Tarusawa E, Kulik A, Unger A, Ivankova K, Seddik R, Tiao JY, Rajalu M, Trojanova J, Rohde V, Gassmann M, Schulte U, Fakler B, Bettler B.
Nature. 2010 Apr 18. [Epub ahead of print]PMID: 20400944

Quantitative proteomics approach for identifying protein-drug interactions in complex mixtures using protein stability measurements.
West GM, Tucker CL, Xu T, Park SK, Han X, Yates JR 3rd, Fitzgerald MC.
Proc Natl Acad Sci U S A. 2010 May 3. [Epub ahead of print]PMID: 20439767

Conservation and divergence of methylation patterning in plants and animals.
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE.
Proc Natl Acad Sci U S A. 2010 Apr 15. [Epub ahead of print]PMID: 20395551

Imprints of the genetic code in the ribosome.
Johnson DB, Wang L.
Proc Natl Acad Sci U S A. 2010 Apr 12. [Epub ahead of print]PMID: 20385807

A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0.
Chou KC, Shen HB.
PLoS One. 2010 Apr 1;5(4):e9931.PMID: 20368981

Glycopeptide-specific monoclonal antibodies suggest new roles for O-GlcNAc.
Teo CF, Ingale S, Wolfert MA, Elsayed GA, Not LG, Chatham JC, Wells L, Boons GJ.
Nat Chem Biol. 2010 Mar 21. [Epub ahead of print]PMID: 20305658

Maximal entropy inference of oncogenicity from phosphorylation signaling.
Graeber TG, Heath JR, Skaggs BJ, Phelps ME, Remacle F, Levine RD.
Proc Natl Acad Sci U S A. 2010 Mar 11. [Epub ahead of print]PMID: 20224037

Human galectin-3 interacts with two anticancer drugs.
Bogoeva V, Varriale A, John CM, D'Auria S.
Proteomics. 2010 Mar 5. [Epub ahead of print]PMID: 20209510

Boosting the prediction and understanding of DNA-binding domains from sequence.
Langlois RE, Lu H.
Nucleic Acids Res. 2010 Feb 15. [Epub ahead of print]PMID: 20156993

A eukaryotic-acquired gene by a biotrophic phytopathogen allows prolonged survival on the host by counteracting the shut-down of plant photosynthesis.
Garavaglia BS, Thomas L, Gottig N, Dunger G, Garofalo CG, Daurelio LD, Ndimba B, Orellano EG, Gehring C, Ottado J.
PLoS One. 2010 Jan 28;5(1):e8950.PMID: 20126632

Magnetic particles as powerful purification tool for high sensitive mass spectrometric screening procedures.
Peter JF, Otto AM.
Proteomics. 2010 Jan 22. [Epub ahead of print]PMID: 20099258

RBBP9: A tumor-associated serine hydrolase activity required for pancreatic neoplasia.
Shields DJ, Niessen S, Murphy EA, Mielgo A, Desgrosellier JS, Lau SK, Barnes LA, Lesperance J, Bouvet M, Tarin D, Cravatt BF, Cheresh DA.
Proc Natl Acad Sci U S A. 2010 Jan 4. [Epub ahead of print]PMID: 20080647

Enriching quantitative proteomics with SI(N).
Sardiu ME, Washburn MP.
Nat Biotechnol. 2010 Jan;28(1):40-2. No abstract available. PMID: 20062039

Quantitative proteomics analysis of cell cycle regulated Golgi disassembly and reassembly.
Chen X, Simon ES, Xiang Y, Kachman M, Andrews PC, Wang Y.
J Biol Chem. 2010 Jan 7. [Epub ahead of print]PMID: 20056612

SnAvi - a new tandem tag for high-affinity protein-complex purification.
Schaffer U, Schlosser A, Muller KM, Schafer A, Katava N, Baumeister R, Schulze E.
Nucleic Acids Res. 2010 Jan 4. [Epub ahead of print]PMID: 20047968

HERC2 coordinates ubiquitin-dependent assembly of DNA repair factors on damaged chromosomes.
Bekker-Jensen S, Danielsen JR, Fugger K, Gromova I, Nerstedt A, Bartek J, Lukas J, Mailand N.
Nat Cell Biol. 2010 Jan;12(1):80-6; sup pp 1-12. Epub 2009 Dec 20.PMID: 20023648