バイオ研究とバイオ研究者の情報チャンネル
                   biolohas.jp

 

proteomics 20100914


25998



Proteomics: A discovery strategy for novel cancer biomarkers.
Swami M.
Nat Rev Cancer. 2010 Sep;10(9):597. No abstract available. PMID: 20803807
レビュー

Clinical microfluidics for neutrophil genomics and proteomics.
Kotz KT, Xiao W, Miller-Graziano C, Qian WJ, Russom A, Warner EA, Moldawer LL, De A, Bankey PE, Petritis BO, Camp DG 2nd, Rosenbach AE, Goverman J, Fagan SP, Brownstein BH, Irimia D, Xu W, Wilhelmy J, Mindrinos MN, Smith RD, Davis RW, Tompkins RG, Toner M; the Inflammation and the Host Response to Injury Collaborative Research Program, Baker HV, Balis UG, Billiar TR, Calvano SE, Cobb JP, Cuschieri J, Finnerty CC, Gamelli RL, Gibran NS, Harbrecht BG, Hayden DL, Hennessy L, Herndon DN, Jeschke MG, Johnson JL, Klein MB, Lowry SF, Maier RV, Mason PH, McDonald-Smith GP, Minei JP, Moore EE, Nathens AB, O Keefe GE, Rahme LG, Remick DG, Schoenfeld DA, Shapiro MB, Sperry J, Storey JD, Tibshirani R, Warren HS, West MA, Wispelwey B, Wong WH.
Nat Med. 2010 Aug 29. [Epub ahead of print]PMID: 20802500
好中球のプロテオミクス


Molecular diagnostics in transplantation.
Naesens M, Sarwal MM.
Nat Rev Nephrol. 2010 Aug 24. [Epub ahead of print]PMID: 20736923
移植の際の分子動態


The grand challenge to decipher the cancer proteome.
Hanash S, Taguchi A.
Nat Rev Cancer. 2010 Sep;10(9):652-60.PMID: 20733593
レビュー


SMN deficiency disrupts brain development in a mouse model of severe spinal muscular atrophy.
Wishart TM, Huang JP, Murray LM, Lamont DJ, Mutsaers CA, Ross J, Geldsetzer P, Ansorge O, Talbot K, Parson SH, Gillingwater TH.
Hum Mol Genet. 2010 Aug 12. [Epub ahead of print]PMID: 20705736
脳の発達に関与する遺伝子


Recent patent applications in proteomics.
[No authors listed]
Nat Biotechnol. 2010 Aug;28(8):806. No abstract available. PMID: 20697403
レビュー


Genome-wide association study identifies 1p36.22 as a new susceptibility locus for hepatocellular carcinoma in chronic hepatitis B virus carriers.
Zhang H, Zhai Y, Hu Z, Wu C, Qian J, Jia W, Ma F, Huang W, Yu L, Yue W, Wang Z, Li P, Zhang Y, Liang R, Wei Z, Cui Y, Xie W, Cai M, Yu X, Yuan Y, Xia X, Zhang X, Yang H, Qiu W, Yang J, Gong F, Chen M, Shen H, Lin D, Zeng YX, He F, Zhou G.
Nat Genet. 2010 Aug 1. [Epub ahead of print]PMID: 20676096
ウィルス感染で、がんになりやすいSNP


Nucleolar proteomics and viral infection.
Hiscox JA, Whitehouse A, Matthews DA.
Proteomics. 2010 Jul 19. [Epub ahead of print]PMID: 20661956
ウィルスに感染した細胞の核のプロテオミクス


Differentiation among various kinds of cheese by identification of casein using HPLC-chip/MS/MS.
Franc M, K?i?ek T, Coufal P, Stulik K.
J Sep Sci. 2010 Jul 19. [Epub ahead of print]PMID: 20645391
チーズのプロテオミクス


Identification of optimal drug combinations targeting cellular networks: integrating phospho-proteomics and computational network analysis.
Iadevaia S, Lu Y, Morales FC, Mills GB, Ram PT.
Cancer Res. 2010 Jul 19. [Epub ahead of print]PMID: 20643779
最適な薬の組み合わせをリン酸化状態の解析で決める


Proteomics: a pragmatic perspective.
Mallick P, Kuster B.
Nat Biotechnol. 2010 Jul;28(7):695-709. Epub 2010 Jul 9.PMID: 20622844
レビュー、この号に特集あり


The Rate of Cell Differentiation Controls the Arabidopsis Root Meristem Growth Phase.
Moubayidin L, Perilli S, Dello Ioio R, Di Mambro R, Costantino P, Sabatini S.
Curr Biol. 2010 Jun 2. [Epub ahead of print]PMID: 20605455
植物の根の細胞の分裂スピードを決める遺伝子


When peptides fly: Advances in Drosophila proteomics.
Veraksa A.
J Proteomics. 2010 May 22. [Epub ahead of print]PMID: 20580952
ショウジョウバエのプロテオミクス、レビュー


Human POGZ modulates dissociation of HP1alpha from mitotic chromosome arms through Aurora B activation.
Nozawa RS, Nagao K, Masuda HT, Iwasaki O, Hirota T, Nozaki N, Kimura H, Obuse C.
Nat Cell Biol. 2010 Jun 20. [Epub ahead of print]PMID: 20562864
ヘテロクロマチンの形成機構


Ecological Adaptation of Diverse Honey Bee (Apis mellifera) Populations.
Parker R, Melathopoulos AP, White R, Pernal SF, Guarna MM, Foster LJ.
PLoS One. 2010 Jun 15;5(6):e11096.PMID: 20559562
天候で変化するミツバチの代謝

Proteomic identification of phosphatidylinositol (3,4,5) triphosphate-binding proteins in Dictyostelium discoideum.
Zhang P, Wang Y, Sesaki H, Iijima M.
Proc Natl Acad Sci U S A. 2010 Jun 14. [Epub ahead of print]PMID: 20547830
PtdInsP(3)に結合するタンパク質


Next-generation genomics: an integrative approach.
Hawkins RD, Hon GC, Ren B.
Nat Rev Genet. 2010 Jun 8. [Epub ahead of print]PMID: 20531367
レビュー


Complementary positional proteomics for screening substrates of endo- and exoproteases.
Van Damme P, Staes A, Bronsoms S, Helsens K, Colaert N, Timmerman E, Aviles FX, Vandekerckhove J, Gevaert K.
Nat Methods. 2010 Jun 6. [Epub ahead of print]PMID: 20526345
N端C端ペプチドの解析


Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints.
Zielinska DF, Gnad F, Wi?niewski JR, Mann M.
Cell. 2010 May 28;141(5):897-907.PMID: 20510933
糖鎖の正確なマッピング

PiRaNhA: a server for the computational prediction of RNA-binding residues in protein sequences.
Murakami Y, Spriggs RV, Nakamura H, Jones S.
Nucleic Acids Res. 2010 May 27. [Epub ahead of print]PMID: 20507911
タンパク質のRNA結合残基を予測


Quantifying cross-tissue diversity in proteasome complexes by mass spectrometry.
Pelletier S, Schuurman KG, Berkers CR, Ovaa H, Heck AJ, Raijmakers R.
Mol Biosyst. 2010 May 24. [Epub ahead of print]PMID: 20498902
プロテアゾーム複合体の中身


abelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling.
Medina I, Carbonell J, Pulido L, Madeira SC, Goetz S, Conesa A, Tarraga J, Pascual-Montano A, Nogales-Cadenas R, Santoyo J, Garcia F, Marba M, Montaner D, Dopazo J.
Nucleic Acids Res. 2010 May 16. [Epub ahead of print]PMID: 20478823
ゲノム解析サービス


Mass spectrometry and the evolution of proteomics.
Burlingame AL, Stults JT.
Mol Cell Proteomics. 2010 May;9(5):753. No abstract available. PMID: 20439911
レビュー

Native GABA(B) receptors are heteromultimers with a family of auxiliary subunits.
Schwenk J, Metz M, Zolles G, Turecek R, Fritzius T, Bildl W, Tarusawa E, Kulik A, Unger A, Ivankova K, Seddik R, Tiao JY, Rajalu M, Trojanova J, Rohde V, Gassmann M, Schulte U, Fakler B, Bettler B.
Nature. 2010 Apr 18. [Epub ahead of print]PMID: 20400944
GABA(B)レセプターの構成


Quantitative proteomics approach for identifying protein-drug interactions in complex mixtures using protein stability measurements.
West GM, Tucker CL, Xu T, Park SK, Han X, Yates JR 3rd, Fitzgerald MC.
Proc Natl Acad Sci U S A. 2010 May 3. [Epub ahead of print]PMID: 20439767
薬剤と相互作用するタンパク質を同定


Conservation and divergence of methylation patterning in plants and animals.
Feng S, Cokus SJ, Zhang X, Chen PY, Bostick M, Goll MG, Hetzel J, Jain J, Strauss SH, Halpern ME, Ukomadu C, Sadler KC, Pradhan S, Pellegrini M, Jacobsen SE.
Proc Natl Acad Sci U S A. 2010 Apr 15. [Epub ahead of print]PMID: 20395551
動物や植物のゲノムのメチル化パターンを解析

Imprints of the genetic code in the ribosome.
Johnson DB, Wang L.
Proc Natl Acad Sci U S A. 2010 Apr 12. [Epub ahead of print]PMID: 20385807
リボゾーム内のアンチコドンの進化


A new method for predicting the subcellular localization of eukaryotic proteins with both single and multiple sites: Euk-mPLoc 2.0.
Chou KC, Shen HB.
PLoS One. 2010 Apr 1;5(4):e9931.PMID: 20368981
タンパク質の細胞内局在を予測


Glycopeptide-specific monoclonal antibodies suggest new roles for O-GlcNAc.
Teo CF, Ingale S, Wolfert MA, Elsayed GA, Not LG, Chatham JC, Wells L, Boons GJ.
Nat Chem Biol. 2010 Mar 21. [Epub ahead of print]PMID: 20305658
グリコペプチド特異的モノクロ抗体


Maximal entropy inference of oncogenicity from phosphorylation signaling.
Graeber TG, Heath JR, Skaggs BJ, Phelps ME, Remacle F, Levine RD.
Proc Natl Acad Sci U S A. 2010 Mar 11. [Epub ahead of print]PMID: 20224037
リン酸化部位の突然変異と表現形の変化


Human galectin-3 interacts with two anticancer drugs.
Bogoeva V, Varriale A, John CM, D'Auria S.
Proteomics. 2010 Mar 5. [Epub ahead of print]PMID: 20209510
抗がん剤と結合するタンパク質


Boosting the prediction and understanding of DNA-binding domains from sequence.
Langlois RE, Lu H.
Nucleic Acids Res. 2010 Feb 15. [Epub ahead of print]PMID: 20156993
DNA結合ドメインの配列


A eukaryotic-acquired gene by a biotrophic phytopathogen allows prolonged survival on the host by counteracting the shut-down of plant photosynthesis.
Garavaglia BS, Thomas L, Gottig N, Dunger G, Garofalo CG, Daurelio LD, Ndimba B, Orellano EG, Gehring C, Ottado J.
PLoS One. 2010 Jan 28;5(1):e8950.PMID: 20126632
バクテリア由来の、ナトリウム利尿ペプチド様タンパク質の、植物での働き


Magnetic particles as powerful purification tool for high sensitive mass spectrometric screening procedures.
Peter JF, Otto AM.
Proteomics. 2010 Jan 22. [Epub ahead of print]PMID: 20099258
サンプルの調製方法

RBBP9: A tumor-associated serine hydrolase activity required for pancreatic neoplasia.
Shields DJ, Niessen S, Murphy EA, Mielgo A, Desgrosellier JS, Lau SK, Barnes LA, Lesperance J, Bouvet M, Tarin D, Cravatt BF, Cheresh DA.
Proc Natl Acad Sci U S A. 2010 Jan 4. [Epub ahead of print]PMID: 20080647
がん細胞が増殖しやすくなる因子


Enriching quantitative proteomics with SI(N).
Sardiu ME, Washburn MP.
Nat Biotechnol. 2010 Jan;28(1):40-2. No abstract available. PMID: 20062039
定量プロテオミクス

Quantitative proteomics analysis of cell cycle regulated Golgi disassembly and reassembly.
Chen X, Simon ES, Xiang Y, Kachman M, Andrews PC, Wang Y.
J Biol Chem. 2010 Jan 7. [Epub ahead of print]PMID: 20056612
ゴルジ体の定量プロテオミクス


SnAvi - a new tandem tag for high-affinity protein-complex purification.
Schaffer U, Schlosser A, Muller KM, Schafer A, Katava N, Baumeister R, Schulze E.
Nucleic Acids Res. 2010 Jan 4. [Epub ahead of print]PMID: 20047968
タンデムに並んだタグで、タンパク質複合体を精製

HERC2 coordinates ubiquitin-dependent assembly of DNA repair factors on damaged chromosomes.
Bekker-Jensen S, Danielsen JR, Fugger K, Gromova I, Nerstedt A, Bartek J, Lukas J, Mailand N.
Nat Cell Biol. 2010 Jan;12(1):80-6; sup pp 1-12. Epub 2009 Dec 20.PMID: 20023648
DNA修復タンパク質がユビキチン化とともに複合体を形成