バイオ研究とバイオ研究者の情報チャンネル
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proteome 20091216

14794

Proteome organization in a genome-reduced bacterium.
Kuhner S, van Noort V, Betts MJ, Leo-Macias A, Batisse C, Rode M, Yamada T, Maier T, Bader S, Beltran-Alvarez P, Castano-Diez D, Chen WH, Devos D, Guell M, Norambuena T, Racke I, Rybin V, Schmidt A, Yus E, Aebersold R, Herrmann R, Bottcher B, Frangakis AS, Russell RB, Serrano L, Bork P, Gavin AC.
Science. 2009 Nov 27;326(5957):1235-40.PMID: 19965468
ゲノム最小のバクテリアのプロテオーム解析


Systems-level dynamic analyses of fate change in murine embryonic stem cells.
Lu R, Markowetz F, Unwin RD, Leek JT, Airoldi EM, Macarthur BD, Lachmann A, Rozov R, Ma'ayan A, Boyer LA, Troyanskaya OG, Whetton AD, Lemischka IR.
Nature. 2009 Nov 19;462(7271):358-362.
PMID: 19924215
ES細胞の組織的解析


Adding a spatial dimension to the proteome.
Grunewald K.
Nat Methods. 2009 Nov;6(11):798-800. No abstract available.
PMID: 19876016

コメント。タンパク質の複合体状態を観察


"Self-nonself" peptides in the design of vaccines.
Kanduc D.
Curr Pharm Des. 2009;15(28):3283-9.
PMID: 19860677

抗原としてのペプチド、レビュー


Global analysis of the mitochondrial N-proteome identifies a processing peptidase critical for protein stability.
Vogtle FN, Wortelkamp S, Zahedi RP, Becker D, Leidhold C, Gevaert K, Kellermann J, Voos W, Sickmann A, Pfanner N, Meisinger C.
Cell. 2009 Oct 16;139(2):428-39.
PMID: 19837041
ミトコンドリアのN末端ペプチターゼが、タンパク質を安定化させる


Adenosine deamination in human transcripts generates novel microRNA binding sites
.
Borchert GM, Gilmore BL, Spengler RM, Xing Y, Lanier W, Bhattacharya D, Davidson BL.
Hum Mol Genet. 2009 Sep 23.
PMID: 19776031
mRNAの変異で、別のmiRNAが効くことがある


RNA editing: a driving force for adaptive evolution?
Gommans WM, Mullen SP, Maas S.
Bioessays. 2009 Aug 25.
PMID: 19708020
レビュー

Human myelin proteome and comparative analysis with mouse myelin.
Ishii A, Dutta R, Wark GM, Hwang SI, Han DK, Trapp BD, Pfeiffer SE, Bansal R.
Proc Natl Acad Sci U S A. 2009 Aug 25;106(34):14605-10. Epub 2009 Aug 13.
PMID: 19706548
ミエリンのプロテオーム解析


Target profiling of small molecules by chemical proteomics.
Rix U, Superti-Furga G.
Nat Chem Biol. 2009 Sep;5(9):616-24.
PMID: 19690537
小分子のターゲットとなるレセプターを見つけるプロテオミクス


Proteome-wide prediction of acetylation substrates.
Basu A, Rose KL, Zhang J, Beavis RC, Ueberheide B, Garcia BA, Chait B, Zhao Y, Hunt DF, Segal E, Allis CD, Hake SB.
Proc Natl Acad Sci U S A. 2009 Aug 3. [Epub ahead of print]
PMID: 19666589
アセチル化サイトの予測

Full Dynamic Range Proteome Analysis of S. cerevisiae by Targeted Proteomics.
Picotti P, Bodenmiller B, Mueller LN, Domon B, Aebersold R.
Cell. 2009 Aug 5. [Epub ahead of print]
PMID: 19664813
細胞内の少ないたんぱく質を検出


Proteome-wide cellular protein concentrations of the human pathogen Leptospira interrogans.
Malmstrom J, Beck M, Schmidt A, Lange V, Deutsch EW, Aebersold R.
Nature. 2009 Jul 15.
PMID: 19606093
細胞内の、それぞれのたんぱく質を定量化する


Identification of a consensus motif in substrates bound by a Type I Hsp40.
Kota P, Summers DW, Ren HY, Cyr DM, Dokholyan NV.
Proc Natl Acad Sci U S A. 2009 Jun 22.
PMID: 19549854
毒性タンパク質にある凝集の阻害に関与するコンセンサス配列


Unlimited multistability in multisite phosphorylation systems.
Thomson M, Gunawardena J.
Nature. 2009 Jun 17.
PMID: 1953615
タンパク質リン酸化の定常状態を計算


Direct selection of monoclonal phosphospecific antibodies without prior phosphoamino acid mapping.
Vielemeyer O, Yuan H, Moutel S, Saint-Fort R, Tang D, Nizak C, Goud B, Wang Y, Perez F.
J Biol Chem. 2009 May 27.
PMID: 19473967
リン酸化タンパク質特異的なモノクロ抗体を単離


A common allele in RPGRIP1L is a modifier of retinal degeneration in ciliopathies.
Khanna H, Davis EE, Murga-Zamalloa CA, Estrada-Cuzcano A, Lopez I, den Hollander AI, Zonneveld MN, Othman MI, Waseem N, Chakarova CF, Maubaret C, Diaz-Font A, Macdonald I, Muzny DM, Wheeler DA, Morgan M, Lewis LR, Logan CV, Tan PL, Beer MA, Inglehearn CF, Lewis RA, Jacobson SG, Bergmann C, Beales PL, Attie-Bitach T, Johnson CA, Otto EA, Bhattacharya SS, Hildebrandt F, Gibbs RA, Koenekoop RK, Swaroop A, Katsanis N.
Nat Genet. 2009 May 10.
PMID: 19430481
視力に関係する遺伝子

HAUS, the 8-Subunit Human Augmin Complex, Regulates Centrosome and Spindle Integrity.
Lawo S, Bashkurov M, Mullin M, Ferreria MG, Kittler R, Habermann B, Tagliaferro A, Poser I, Hutchins JR, Hegemann B, Pinchev D, Buchholz F, Peters JM, Hyman AA, Gingras AC, Pelletier L.
Curr Biol. 2009 May 6.
PMID: 19427217
染色体の分離に関与するタンパク質


Quantitative measurement of specific biomarkers for protein oxidation, nitration and glycation in Arabidopsis leaves.
Bechtold U, Rabbani N, Mullineaux PM, Thornalley PJ.
Plant J. 2009 Apr 25.
PMID: 19392687
タンパク質の損傷をプロテオーム解析


A systematic survey identifies prions and illuminates sequence features of prionogenic proteins.
Alberti S, Halfmann R, King O, Kapila A, Lindquist S.
Cell. 2009 Apr 3;137(1):146-58.
PMID: 19345193
プリオンのプロテオミクス


Identification of the small protein rich in arginine and glycine (SRAG): A newly identified nucleolar protein that can regulate cell proliferation.
Zullo AJ, Michaud M, Zhang W, Grusby MJ.
J Biol Chem. 2009 Mar 2.
PMID: 19254951
核内に存在するSRAG


Comparative Functional Analysis of the Caenorhabditis elegans and Drosophila melanogaster Proteomes.
Schrimpf SP, Weiss M, Reiter L, Ahrens CH, Jovanovic M, Malmstrom J, Brunner E, Mohanty S, Lercher MJ, Hunziker PE, Aebersold R, von Mering C, Hengartner MO.
PLoS Biol. 2009 Mar 3;7(3):e48.
PMID: 19260763
線虫とショウジョウバエとのプロテオームの比較

Combining affinity purification by ADP-ribose-binding macro domains with mass spectrometry to define the mammalian ADP-ribosyl proteome.
Dani N, Stilla A, Marchegiani A, Tamburro A, Till S, Ladurner AG, Corda D, Di Girolamo M.
Proc Natl Acad Sci U S A. 2009 Feb 25.
PMID: 19246377
ADPリボシル化に関与するたんぱく質をプロテオーム解析


A systems biology understanding of the synergistic effects of arsenic sulfide and Imatinib in BCR/ABL-associated leukemia.
Zhang QY, Mao JH, Liu P, Huang QH, Lu J, Xie YY, Weng L, Zhang Y, Chen Q, Chen SJ, Chen Z.
Proc Natl Acad Sci U S A. 2009 Feb 10.
PMID: 19208803


Prediction of high-responding peptides for targeted protein assays by mass spectrometry.
Fusaro VA, Mani DR, Mesirov JP, Carr SA.
Nat Biotechnol. 2009 Jan 25.
PMID: 19169245


Identification of novel alternative splice isoforms of circulating proteins in a mouse model of human pancreatic cancer.
Menon R, Zhang Q, Zhang Y, Fermin D, Bardeesy N, DePinho RA, Lu C, Hanash SM, Omenn GS, States DJ.
Cancer Res. 2009 Jan 1;69(1):300-9.
PMID: 19118015
がん細胞のスプライシング


The use of amphipols as universal molecular adapters to immobilize membrane proteins onto solid supports.
Charvolin D, Perez JB, Rouviere F, Giusti F, Bazzacco P, Abdine A, Rappaport F, Martinez KL, Popot JL.
Proc Natl Acad Sci U S A. 2008 Dec 30.
PMID: 19116278

Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways.
Zhao Z, Zhang W, Stanley BA, Assmann SM.
Plant Cell. 2008 Dec 29.
PMID: 19114538

Guard Cell Proteome Reveals Signals and Surprises.
Mach J.
Plant Cell. 2008 Dec 29.
PMID: 19114536

Discovery and revision of Arabidopsis genes by proteogenomics.
Castellana NE, Payne SH, Shen Z, Stanke M, Bafna V, Briggs SP.
Proc Natl Acad Sci U S A. 2008 Dec 30;105(52):21034-8. Epub 2008 Dec 19.
PMID: 19098097

Co-inhibition of Plasmodium falciparum S-adenosylmethionine decarboxylase/ornithine decarboxylase reveals perturbation-specific compensatory mechanisms by transcriptome, proteome and metabolome analyses.
van Brummelen AC, Olszewski KL, Wilinski D, Llinas M, Louw AI, Birkholtz LM.
J Biol Chem. 2008 Dec 10.
PMID: 19073607

Human protein factory for converting the transcriptome into an in vitro-expressed proteome,.
Goshima N, Kawamura Y, Fukumoto A, Miura A, Honma R, Satoh R, Wakamatsu A, Yamamoto J, Kimura K, Nishikawa T, Andoh T, Iida Y, Ishikawa K, Ito E, Kagawa N, Kaminaga C, Kanehori K, Kawakami B, Kenmochi K, Kimura R, Kobayashi M, Kuroita T, Kuwayama H, Maruyama Y, Matsuo K, Minami K, Mitsubori M, Mori M, Morishita R, Murase A, Nishikawa A, Nishikawa S, Okamoto T, Sakagami N, Sakamoto Y, Sasaki Y, Seki T, Sono S, Sugiyama A, Sumiya T, Takayama T, Takayama Y, Takeda H, Togashi T, Yahata K, Yamada H, Yanagisawa Y, Endo Y, Imamoto F, Kisu Y, Tanaka S, Isogai T, Imai J, Watanabe S, Nomura N.
Nat Methods. 2008 Dec;5(12):1011-7.
PMID: 19054851