oligonucleotide 20091222


Human POT1 is required for efficient telomere C-rich strand replication in the absence of WRN.
Arnoult N, Saintome C, Ourliac-Garnier I, Riou JF, Londono-Vallejo A.
Genes Dev. 2009 Dec 15;23(24):2915-24.PMID: 20008939

In vivo selection of tumor-targeting RNA motifs.
Mi J, Liu Y, Rabbani ZN, Yang Z, Urban JH, Sullenger BA, Clary BM.
Nat Chem Biol. 2010 Jan;6(1):22-4. Epub 2009 Nov 29.PMID: 19946274

Therapeutic Silencing of MicroRNA-122 in Primates with Chronic Hepatitis C Virus Infection.
Lanford RE, Hildebrandt-Eriksen ES, Petri A, Persson R, Lindow M, Munk ME, Kauppinen S, Orum H.
Science. 2009 Dec 3. [Epub ahead of print]PMID: 19965718

Sequence-Specific Correction of Genomic HPRT Mutations in Lymphoblasts by Small Fragment Homologous Replacement (SFHR).
Bedayat B, Abdolmohamadi A, Ye L, Maurisse R, Parsi H, Schwarz J, Emamekhoo H, Nicklas JA, Oneill JP, Gruenert DC.
Oligonucleotides. 2009 Dec 8. [Epub ahead of print]PMID: 19995283

Tuning the cellular uptake and cytotoxicity properties of oligonucleotide intercalator-functionalized mesoporous silica nanoparticles with human cervical cancer cells HeLa.
Vivero-Escoto JL, Slowing II, Lin VS.
Biomaterials. 2009 Nov 23.
PMID: 19932923

Enhanced gene repair mediated by methyl-CpG-modified single-stranded oligonucleotides.
Bertoni C, Rustagi A, Rando TA.
Nucleic Acids Res. 2009 Oct 23.
PMID: 19854937

In ovo application of antagomiRs indicates a role for miR-196 in patterning the chick axial skeleton through Hox gene regulation.
McGlinn E, Yekta S, Mansfield JH, Soutschek J, Bartel DP, Tabin CJ.
Proc Natl Acad Sci U S A. 2009 Oct 21
PMID: 19846767

The HSV-1 ICP27 RGG box specifically binds flexible, GC-rich sequences but not G-quartet structures.
Corbin-Lickfett KA, Chen IH, Cocco MJ, Sandri-Goldin RM.
Nucleic Acids Res. 2009 Sep 26.
PMID: 19783816

Origins and functional impact of copy number variation in the human genome.
Conrad DF, Pinto D, Redon R, Feuk L, Gokcumen O, Zhang Y, Aerts J, Andrews TD, Barnes C, Campbell P, Fitzgerald T, Hu M, Ihm CH, Kristiansson K, Macarthur DG, Macdonald JR, Onyiah I, Pang AW, Robson S, Stirrups K, Valsesia A, Walter K, Wei J; The Wellcome Trust Case Control Consortium, Tyler-Smith C, Carter NP, Lee C, Scherer SW, Hurles ME.
Nature. 2009 Oct 7.
PMID: 19812545

Recent Patents in Antiviral siRNAs.
Saravolac EG, Wong JP, Cairns MJ.
Recent Pat Antiinfect Drug Discov. 2009 Oct 7.
PMID: 19807677

Direct RNA sequencing.
Ozsolak F, Platt AR, Jones DR, Reifenberger JG, Sass LE, McInerney P, Thompson JF, Bowers J, Jarosz M, Milos PM.
Nature. 2009 Sep 23.
PMID: 19776739

Oncogene homologue Sch9 promotes age-dependent mutations by a superoxide and Rev1/Polzeta-dependent mechanism.
Madia F, Wei M, Yuan V, Hu J, Gattazzo C, Pham P, Goodman MF, Longo VD.
J Cell Biol. 2009 Aug 24;186(4):509-23. Epub 2009 Aug 17.
PMID: 19687253

Targeted gene conversion induced by triplex-directed psoralen interstrand crosslinks in mammalian cells.
Liu Y, Nairn RS, Vasquez KM.
Nucleic Acids Res. 2009 Sep 2.
PMID: 19726585

CpG methylation potentiates pixantrone and doxorubicin-induced DNA damage and is a marker of drug sensitivity.
Evison BJ, Bilardi RA, Chiu FC, Pezzoni G, Phillips DR, Cutts SM.
Nucleic Acids Res. 2009 Aug 31.
PMID: 19720735

Zip Nucleic Acids: new high affinity oligonucleotides as potent primers for PCR and reverse transcription.
Moreau V, Voirin E, Paris C, Kotera M, Nothisen M, Remy JS, Behr JP, Erbacher P, Lenne-Samuel N.
Nucleic Acids Res. 2009 Aug 20.
PMID: 19696078

Triplet-repeat oligonucleotide-mediated reversal of RNA toxicity in myotonic dystrophy.
Mulders SA, van den Broek WJ, Wheeler TM, Croes HJ, van Kuik-Romeijn P, de Kimpe SJ, Furling D, Platenburg GJ, Gourdon G, Thornton CA, Wieringa B, Wansink DG.
Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13915-20. Epub 2009 Aug 10.
PMID: 19667189

Targeted inhibition of Snail family zinc finger transcription factors by oligonucleotide-Co(III) Schiff base conjugate.
Harney AS, Lee J, Manus LM, Wang P, Ballweg DM, Labonne C, Meade TJ.
Proc Natl Acad Sci U S A. 2009 Aug 3. [Epub ahead of print]
PMID: 19666616

An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae.
Cahoon LA, Seifert HS.
Science. 2009 Aug 7;325(5941):764-7.
PMID: 19661435

An alternative DNA structure is necessary for pilin antigenic variation in Neisseria gonorrhoeae.
Cahoon LA, Seifert HS.
Science. 2009 Aug 7;325(5941):764-7.
PMID: 19661435

An integrated genome screen identifies the Wnt signaling pathway as a major target of WT1.
Kim MK, McGarry TJ, O Broin P, Flatow JM, Golden AA, Licht JD.
Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11154-9. Epub 2009 Jun 22.
PMID: 19549856

SirT1 knockdown in liver decreases basal hepatic glucose production and increases hepatic insulin responsiveness in diabetic rats.
Erion DM, Yonemitsu S, Nie Y, Nagai Y, Gillum MP, Hsiao JJ, Iwasaki T, Stark R, Weismann D, Yu XX, Murray SF, Bhanot S, Monia BP, Horvath TL, Gao Q, Samuel VT, Shulman GI.
Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11288-93. Epub 2009 Jun 22.
PMID: 19549853

Detection of cancer with serum miRNAs on an oligonucleotide microarray.
Lodes MJ, Caraballo M, Suciu D, Munro S, Kumar A, Anderson B.
PLoS One. 2009 Jul 14;4(7):e6229.
PMID: 19597549

NPAS3 is a trachealess homolog critical for lung development and homeostasis.
Zhou S, Degan S, Potts EN, Foster WM, Sunday ME.
Proc Natl Acad Sci U S A. 2009 Jul 6.
PMID: 19581591

Protein-free small nuclear RNAs catalyze a two-step splicing reaction.
Valadkhan S, Mohammadi A, Jaladat Y, Geisler S.
Proc Natl Acad Sci U S A. 2009 Jun 22.
PMID: 19549866

MLL associates with telomeres and regulates telomeric repeat-containing RNA transcription.
Caslini C, Connelly JA, Serna A, Broccoli D, Hess JL.
Mol Cell Biol. 2009 Jun 15.
PMID: 19528237

(micro)genomic medicine: microRNAs as therapeutics and biomarkers.
Saunders MA, Lim LP.
RNA Biol. 2009 Jul 29;6(3).
PMID: 19502816

Preparation of short interfering RNA containing the modified nucleosides 2-thiouridine, pseudouridine, or dihydrouridine.
Nawrot B, Sochacka E.
Curr Protoc Nucleic Acid Chem. 2009 Jun;Chapter 16:Unit 16.2.
PMID: 19488969

Identification of the pollen self-incompatibility determinant in Papaver rhoeas.
Wheeler MJ, de Graaf BH, Hadjiosif N, Perry RM, Poulter NS, Osman K, Vatovec S, Harper A, Franklin FC, Franklin-Tong VE.
Nature. 2009 May 31.
PMID: 19483678

Increasing the relative expression of endogenous non-coding Steroid Receptor RNA Activator (SRA) in human breast cancer cells using modified oligonucleotides.
Cooper C, Guo J, Yan Y, Chooniedass-Kothari S, Hube F, Hamedani MK, Murphy LC, Myal Y, Leygue E.
Nucleic Acids Res. 2009 May 29.
PMID: 19483093

Mismatch repair and nucleotide excision repair proteins cooperate in the recognition of DNA interstrand crosslinks.
Zhao J, Jain A, Iyer RR, Modrich PL, Vasquez KM.
Nucleic Acids Res. 2009 May 25.
PMID: 19468048

A yeast hybrid provides insight into the evolution of gene expression regulation.
Tirosh I, Reikhav S, Levy AA, Barkai N.
Science. 2009 May 1;324(5927):659-62.
PMID: 19407207

Oligonucleotides suppress PKB/Akt and act as superinductors of apoptosis in human keratinocytes.
Kippenberger S, Muller J, Schultz M, Dorn A, Bock A, Aygun H, Thaci D, Hofmann M, Kaufmann R, Bernd A.
Nucleic Acids Res. 2009 Apr 22.
PMID: 19386618

Imaging intracellular RNA distribution and dynamics in living cells.
Tyagi S.
Nat Methods. 2009 May;6(5):331-8.
PMID: 19404252

Self-association of short DNA loops through minor groove C:G:G:C tetrads.
Viladoms J, Escaja N, Frieden M, Gomez-Pinto I, Pedroso E, Gonzalez C.
Nucleic Acids Res. 2009 Mar 24.
PMID: 19321501

Getting a handle on Huntington's disease: silencing neurodegeneration.
La Spada AR.
Nat Med. 2009 Mar;15(3):252-3. No abstract available.
PMID: 19265826

A transposon-based genetic screen in mice identifies genes altered in colorectal cancer.
Starr TK, Allaei R, Silverstein KA, Staggs RA, Sarver AL, Bergemann TL, Gupta M, O'Sullivan MG, Matise I, Dupuy AJ, Collier LS, Powers S, Oberg AL, Asmann YW, Thibodeau SN, Tessarollo L, Copeland NG, Jenkins NA, Cormier RT, Largaespada DA.
Science. 2009 Mar 27;323(5922):1747-50. Epub 2009 Feb 26.
PMID: 19251594

Stem-Loop RT-PCR Quantification of siRNAs In Vitro and In Vivo.
Cheng A, Li M, Liang Y, Wang Y, Wong L, Chen C, Vlassov AV, Magdaleno S.
Oligonucleotides. 2009 Mar 14.
PMID: 19284311

Transcriptomics: The digital generation.
Blow N.
Nature. 2009 Mar 12;458(7235):239-42.
PMID: 19279641

Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors.
Berger MF, Bulyk ML.
Nat Protoc. 2009;4(3):393-411.
PMID: 19265799

Autocatalytic aptazymes enable ligand-dependent exponential amplification of RNA.
Lam BJ, Joyce GF.
Nat Biotechnol. 2009 Feb 22.
PMID: 19234448
RNA enzyme同士の相互作用

Temperature-dependent FRET spectroscopy for the high-throughput analysis of self-assembled DNA nanostructures in real time.
Sacca B, Meyer R, Niemeyer CM.
Nat Protoc. 2009;4(3):271-85.
PMID: 19214179

A synthetic snRNA m3G-CAP enhances nuclear delivery of exogenous proteins and nucleic acids.
Moreno PM, Wenska M, Lundin KE, Wrange O, Stromberg R, Smith CI.
Nucleic Acids Res. 2009 Feb 10.
PMID: 19208638

Regulation of targeted gene repair by intrinsic cellular processes.
Engstrom JU, Suzuki T, Kmiec EB.
Bioessays. 2009 Feb 9;31(2):159-168.
PMID: 19204988

Repeatability of published microarray gene expression analyses.
Ioannidis JP, Allison DB, Ball CA, Coulibaly I, Cui X, Culhane AC, Falchi M, Furlanello C, Game L, Jurman G, Mangion J, Mehta T, Nitzberg M, Page GP, Petretto E, van Noort V.
Nat Genet. 2009 Feb;41(2):149-55. Epub 2008 Jan 28.
PMID: 19174838

Effects of linker sequences on vesicle fusion mediated by lipid-anchored DNA oligonucleotides.
Chan YH, van Lengerich B, Boxer SG.
Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):979-84. Epub 2009 Jan 21.
PMID: 19164559

RNA repair restores hemoglobin expression in IVS2-654 thalassemic mice.
Svasti S, Suwanmanee T, Fucharoen S, Moulton HM, Nelson MH, Maeda N, Smithies O, Kole R.
Proc Natl Acad Sci U S A. 2009 Jan 27;106(4):1205-10. Epub 2009 Jan 21.
PMID: 19164558

AIM2 activates the inflammasome and cell death in response to cytoplasmic DNA.
Fernandes-Alnemri T, Yu JW, Datta P, Wu J, Alnemri ES.
Nature. 2009 Jan 21.
PMID: 19158676

DNA triplex formation with 5-dimethylaminopropargyl deoxyuridine.
Rusling DA, Peng G, Srinivasan N, Fox KR, Brown T.
Nucleic Acids Res. 2009 Jan 12.
PMID: 19139069

The effect of the TRF2 N-terminal and TRFH regions on telomeric G-quadruplex structures.
Pedroso IM, Hayward W, Fletcher TM.
Nucleic Acids Res. 2009 Jan 12.
PMID: 19139067

Self-Sustained Replication of an RNA Enzyme.
Lincoln TA, Joyce GF.
Science. 2009 Jan 8.
PMID: 19131595

Phototoxic aptamers selectively enter and kill epithelial cancer cells.
Ferreira CS, Cheung MC, Missailidis S, Bisland S, Gariepy J.
Nucleic Acids Res. 2008 Dec 22.
PMID: 19103663

Efficient Gene Knockdowns in Human Embryonic Stem Cells Using Lentiviral-Based RNAi.
Tulpule A, Daley GQ.
Methods Mol Biol. 2009;482:35-42.
PMID: 19089348