miRNA 20101004


Small RNAs are on the move.
Chitwood DH, Timmermans MC.
Nature. 2010 Sep 23;467(7314):415-9.PMID: 20864994

Computational Prediction of MicroRNA Targets.
Wang X.
Methods Mol Biol. 2010;667:283-95.PMID: 20827541

MicroRNAs, epigenetics and disease.
Silahtaroglu A, Stenvang J.
Essays Biochem. 2010 Sep 20;48(1):165-85.PMID: 20822493

The potential functions of primary microRNAs in target recognition and repression.
Trujillo RD, Yue SB, Tang Y, O'Gorman WE, Chen CZ.
EMBO J. 2010 Aug 31. [Epub ahead of print]PMID: 20808284

Structural basis of microRNA length variety.
Starega-Roslan J, Krol J, Koscianska E, Kozlowski P, Szlachcic WJ, Sobczak K, Krzyzosiak WJ.
Nucleic Acids Res. 2010 Aug 25. [Epub ahead of print]PMID: 20739353

Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3'UTRs.
Schnall-Levin M, Zhao Y, Perrimon N, Berger B.
Proc Natl Acad Sci U S A. 2010 Aug 20. [Epub ahead of print]PMID: 20729470

The microRNA pathway and cancer.

Kwak PB, Iwasaki S, Tomari Y.
Cancer Sci. 2010 Jul 19. [Epub ahead of print]PMID: 20726859

Mammalian microRNAs predominantly act to decrease target mRNA levels.
Guo H, Ingolia NT, Weissman JS, Bartel DP.
Nature. 2010 Aug 12;466(7308):835-40.PMID: 20703300

OncomiR addiction in an in vivo model of microRNA-21-induced pre-B-cell lymphoma.
Medina PP, Nolde M, Slack FJ.
Nature. 2010 Aug 8. [Epub ahead of print]PMID: 20693987

MicroRNA-132-mediated loss of p120RasGAP activates the endothelium to facilitate pathological angiogenesis.
Anand S, Majeti BK, Acevedo LM, Murphy EA, Mukthavaram R, Scheppke L, Huang M, Shields DJ, Lindquist JN, Lapinski PE, King PD, Weis SM, Cheresh DA.
Nat Med. 2010 Aug 1. [Epub ahead of print]PMID: 20676106

The widespread regulation of microRNA biogenesis, function and decay.
Krol J, Loedige I, Filipowicz W.
Nat Rev Genet. 2010 Jul 27. [Epub ahead of print]PMID: 20661255

MicroRNAs: Genetically Sensitized Worms Reveal New Secrets.
Ambros V.
Curr Biol. 2010 Jul 27;20(14):R598-R600.PMID: 20656201

The role of miRNAs and endogenous siRNAs in maternal-to-zygotic reprogramming and the establishment of pluripotency.
Svoboda P, Flemr M.
EMBO Rep. 2010 Jul 23. [Epub ahead of print]PMID: 20651740

Quantitative analysis of conditional gene inactivation using rationally designed, tetracycline-controlled miRNAs.
Berger SM, Pesold B, Reber S, Schonig K, Berger AJ, Weidenfeld I, Miao J, Berger MR, Gruss OJ, Bartsch D.
Nucleic Acids Res. 2010 Jul 17. [Epub ahead of print]PMID: 20639530

Rationally designed logic integration of regulatory signals in mammalian cells.
Leisner M, Bleris L, Lohmueller J, Xie Z, Benenson Y.
Nat Nanotechnol. 2010 Jul 11. [Epub ahead of print]PMID: 20622866

miRNA malfunction causes spinal motor neuron disease.
Haramati S, Chapnik E, Sztainberg Y, Eilam R, Zwang R, Gershoni N, McGlinn E, Heiser PW, Wills AM, Wirguin I, L Rubin L, Misawa H, Tabin CJ, Brown R Jr, Chen A, Hornstein E.
Proc Natl Acad Sci U S A. 2010 Jun 29. [Epub ahead of print]PMID: 20616011

The Role of MicroRNA in Cardiac Excitability.
Wang Z.
J Cardiovasc Pharmacol. 2010 Jun 24. [Epub ahead of print]PMID: 20588186

Viral miRNAs: tools for immune evasion.
Boss IW, Renne R.
Curr Opin Microbiol. 2010 Jun 24. [Epub ahead of print]PMID: 20580307

A coding-independent function of gene and pseudogene mRNAs regulates tumour biology.
Poliseno L, Salmena L, Zhang J, Carver B, Haveman WJ, Pandolfi PP.
Nature. 2010 Jun 24;465(7301):1033-8.PMID: 20577206

Lineage-specific transcriptional regulation of DICER by MITF in melanocytes.
Levy C, Khaled M, Robinson KC, Veguilla RA, Chen PH, Yokoyama S, Makino E, Lu J, Larue L, Beermann F, Chin L, Bosenberg M, Song JS, Fisher DE.
Cell. 2010 Jun 11;141(6):994-1005.PMID: 20550935

Rapid in situ codetection of noncoding RNAs and proteins in cells and formalin-fixed paraffin-embedded tissue sections without protease treatment.
de Planell-Saguer M, Rodicio MC, Mourelatos Z.
Nat Protoc. 2010;5(6):1061-73. Epub 2010 May 20.PMID: 20539282
in sizuでのmiRNAとタンパク質の検出

Circulating microRNAs are new and sensitive biomarkers of myocardial infarction.
D'Alessandra Y, Devanna P, Limana F, Straino S, Di Carlo A, Brambilla PG, Rubino M, Carena MC, Spazzafumo L, De Simone M, Micheli B, Biglioli P, Achilli F, Martelli F, Maggiolini S, Marenzi G, Pompilio G, Capogrossi MC.
Eur Heart J. 2010 Jun 9. [Epub ahead of print]PMID: 20534597

Engineered RNA viral synthesis of microRNAs.
Varble A, Chua MA, Perez JT, Manicassamy B, Garcia-Sastre A, Tenoever BR.
Proc Natl Acad Sci U S A. 2010 Jun 7. [Epub ahead of print]PMID: 20534531

MicroRNA Networks in Mouse Lung Organogenesis.
Dong J, Jiang G, Asmann YW, Tomaszek S, Jen J, Kislinger T, Wigle DA.
PLoS One. 2010 May 26;5(5):e10854.PMID: 20520778

Emerging paradigms of regulated microRNA processing.
Newman MA, Hammond SM.
Genes Dev. 2010 Jun 1;24(11):1086-92.PMID: 20516194

Lin28a transgenic mice manifest size and puberty phenotypes identified in human genetic association studies.
Zhu H, Shah S, Shyh-Chang N, Shinoda G, Einhorn WS, Viswanathan SR, Takeuchi A, Grasemann C, Rinn JL, Lopez MF, Hirschhorn JN, Palmert MR, Daley GQ.
Nat Genet. 2010 May 30. [Epub ahead of print]PMID: 20512147

MicroRNA as a new player in the cell cycle.
Chen D, Farwell MA, Zhang B.
J Cell Physiol. 2010 May 19. [Epub ahead of print]PMID: 20506120

Genetic variation in microRNA networks: the implications for cancer research.
Ryan BM, Robles AI, Harris CC.
Nat Rev Cancer. 2010 Jun;10(6):389-402.PMID: 20495573

The role of small non-coding RNAs in genome stability and chromatin organization.
van Wolfswinkel JC, Ketting RF.
J Cell Sci. 2010 Jun 1;123(Pt 11):1825-39.PMID: 20484663

mirTools: microRNA profiling and discovery based on high-throughput sequencing.
Zhu E, Zhao F, Xu G, Hou H, Zhou L, Li X, Sun Z, Wu J.
Nucleic Acids Res. 2010 May 16. [Epub ahead of print]PMID: 20478827

MicroRNA-33 and the SREBP Host Genes Cooperate to Control Cholesterol Homeostasis.
Najafi-Shoushtari SH, Kristo F, Li Y, Shioda T, Cohen DE, Gerszten RE, Naar AM.
Science. 2010 May 13. [Epub ahead of print]PMID: 20466882

A screen of chemical modifications identifies position-specific modification by UNA to most potently reduce siRNA off-target effects.
Bramsen JB, Pakula MM, Hansen TB, Bus C, Langkjar N, Odadzic D, Smicius R, Wengel SL, Chattopadhyaya J, Engels JW, Herdewijn P, Wengel J, Kjems J.
Nucleic Acids Res. 2010 May 7. [Epub ahead of print]PMID: 20453030

siRNAs compete with miRNAs for methylation by HEN1 in Arabidopsis.
Yu B, Bi L, Zhai J, Agarwal M, Li S, Wu Q, Ding SW, Meyers BC, Vaucheret H, Chen X.
Nucleic Acids Res. 2010 May 6. [Epub ahead of print]PMID: 20448024

The nuclear export receptor XPO-1 supports primary miRNA processing in C. elegans and Drosophila.
Bussing I, Yang JS, Lai EC, Groshans H.
EMBO J. 2010 Apr 30. [Epub ahead of print]PMID: 20436454

Repression of retrotransposal elements in mouse embryonic stem cells is primarily mediated by DNA methylation-independent mechanism.
Hutnick LK, Huang X, Loo TC, Ma Z, Fan G.
J Biol Chem. 2010 Apr 19. [Epub ahead of print]PMID: 20404320

The miRNA machinery targets Mei-P26 and regulates Myc protein levels in the Drosophila wing.
Herranz H, Hong X, Perez L, Ferreira A, Olivieri D, Cohen SM, Milan M.
EMBO J. 2010 Apr 16. [Epub ahead of print]PMID: 20400939

Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation.

Vohradsky J, Panek J, Vomastek T.
Nucleic Acids Res. 2010 Apr 5. [Epub ahead of print]PMID: 20371515

miRNAs in the Biogenesis of trans-acting siRNAs in Higher Plants.
Allen E, Howell MD.
Semin Cell Dev Biol. 2010 Mar 29. [Epub ahead of print]PMID: 20359543

Therapeutic silencing of miR-10b inhibits metastasis in a mouse mammary tumor model.
Ma L, Reinhardt F, Pan E, Soutschek J, Bhat B, Marcusson EG, Teruya-Feldstein J, Bell GW, Weinberg RA.
Nat Biotechnol. 2010 Mar 28. [Epub ahead of print]PMID: 20351690

Modulation of mismatch repair and genomic stability by miR-155.
Valeri N, Gasparini P, Fabbri M, Braconi C, Veronese A, Lovat F, Adair B, Vannini I, Fanini F, Bottoni A, Costinean S, Sandhu SK, Nuovo GJ, Alder H, Gafa R, Calore F, Ferracin M, Lanza G, Volinia S, Negrini M, McIlhatton MA, Amadori D, Fishel R, Croce CM.
Proc Natl Acad Sci U S A. 2010 Mar 29. [Epub ahead of print]PMID: 20351277

Circulating microRNAs in plasma of patients with gastric cancers.
Tsujiura M, Ichikawa D, Komatsu S, Shiozaki A, Takeshita H, Kosuga T, Konishi H, Morimura R, Deguchi K, Fujiwara H, Okamoto K, Otsuji E.
Br J Cancer. 2010 Mar 16. [Epub ahead of print]PMID: 20234369

Cloning new small RNA sequences.
Tagami Y, Inaba N, Watanabe Y.
Methods Mol Biol. 2010;631:123-38.PMID: 20204873

qRT-PCR of Small RNAs.
Varkonyi-Gasic E, Hellens RP.
Methods Mol Biol. 2010;631:109-22.PMID: 20204872

Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity.
Coolen MW, Stirzaker C, Song JZ, Statham AL, Kassir Z, Moreno CS, Young AN, Varma V, Speed TP, Cowley M, Lacaze P, Kaplan W, Robinson MD, Clark SJ.
Nat Cell Biol. 2010 Feb 21. [Epub ahead of print]PMID: 20173741

miR-9, a MYC/MYCN-activated microRNA, regulates E-cadherin and cancer metastasis.
Ma L, Young J, Prabhala H, Pan E, Mestdagh P, Muth D, Teruya-Feldstein J, Reinhardt F, Onder TT, Valastyan S, Westermann F, Speleman F, Vandesompele J, Weinberg RA.
Nat Cell Biol. 2010 Feb 21. [Epub ahead of print]PMID: 20173740

siRNAs: the hidden face of the small RNA world.

Seitz H.
Curr Biol. 2010 Feb 9;20(3):R108-10.PMID: 20144770

siRNAs: The Hidden Face of the Small RNA World.
Seitz H.
Curr Biol. 2010 Feb 9;20(3):R108-R110.PMID: 20144770

Physiological and pathological roles for microRNAs in the immune system.
O'Connell RM, Rao DS, Chaudhuri AA, Baltimore D.
Nat Rev Immunol. 2010 Feb;10(2):111-22.PMID: 20098459

Transcriptional control of gene expression by microRNAs.
Khraiwesh B, Arif MA, Seumel GI, Ossowski S, Weigel D, Reski R, Frank W.
Cell. 2010 Jan 8;140(1):111-22.PMID: 20085706

Opposing microRNA families regulate self-renewal in mouse embryonic stem cells.
Melton C, Judson RL, Blelloch R.
Nature. 2010 Jan 6. [Epub ahead of print]PMID: 20054295

miR-221 overexpression contributes to liver tumorigenesis.
Pineau P, Volinia S, McJunkin K, Marchio A, Battiston C, Terris B, Mazzaferro V, Lowe SW, Croce CM, Dejean A.
Proc Natl Acad Sci U S A. 2009 Dec 15. [Epub ahead of print]PMID: 20018759